When I run, the room would be the target, so no matter where the ship goes, you can teleport to it.
We even had an enterprising magician give the scout a rug with a very memorable pattern. The scout would sneak into an area, and then unroll the rug on the ground/floor. When the signal was given, the magician would teleport the team onto the rug.
Great way to get those with no sneak skills or in heavy armor to the target area.